species:   Rhsol
pid:       PID0558
parent:    Rhi-milR-70
paralog:   
locus:     KB317727.1:129658-129736
matures:   ['GAUGAUCUUAAGGCUGCAUACGA', 'GUAUGCAUGCUUCAAAUCGUCCUG']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317727.1:129658-129736

0 out of bounds
13 alignments
13 proper strand
13 stranded perfect matches

          **************************        *************************          
UGUCGAAGGAACGUAUGCAUGCUUCAAAUCGUCCUGUACCACCCCAGAUGAUCUUAAGGCUGCAUACGACAUGUCAUCA
((..((.....((((((((.((((.((((((((.((........)))))))).)).)))))))))))).....))..))
----------------------------------------------GAUGAUCUUAAGGCUGCAUACGA---------- l=23 a=4 c
------------GUAUGCAUGCUUCAAAUCGUCCUG------------------------------------------- l=24 a=0 c*
----------------------------------------------GAUGAUCUUAAGGCUGCAUACGA---------- l=23 a=4 ma
------------GUAUGCAUGCUUCAAAUCGUCCUG------------------------------------------- l=24 a=0 ma*

----------------------------------------------GAUGAUCUUAAGGCUGCAUACGA---------- l=23 a=4 (c,ma)
----------------------------------------------GAUGAUCUUAAGGCUGCAUACGAC--------- l=24 a=1 
---------------------------------------------AGAUGAUCUUAAGGCUGCAU-------------- l=20 a=2 
---------------------------------------------AGAUGAUCUUAAGGCUGCAUACGA---------- l=24 a=1 
---------------------------------------------AGAUGAUCUUAAGGCUGCAUACGAC--------- l=25 a=1 
--------------------------------------------CAGAUGAUCUUAAGGCUGCAUACGA---------- l=25 a=1 
--------------------------------------------CAGAUGAUCUUAAGGCUGCAUACGAC--------- l=26 a=1 
-----------------------------------------CCCCAGAUGAUCUUAAGGCUGCAUACGA---------- l=28 a=1 
-----------------CAUGCUUCAAAUCGUCCUG------------------------------------------- l=19 a=1 

mb-01011
ax-1011011
ku-01
ss-101111111110
fn-111
